Greenleaflab/archr
WebOct 5, 2024 · ArchR logging to : ArchRLogs/ArchR-getMarkerFeatures-ea792557637e-Date-2024-09-15_Time-19-21-01.log If there is an issue, please report to github with logFile! 2024-09-15 19:21:02 : Matching … WebI'm continuously try to set-up and understand the data analysis workflow using ArchR. During following "full tutorial", I got question. After calculating gene scores, how can I …
Greenleaflab/archr
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Web4 hours ago · I noticed that when I used the getMatrixFromProject function, there was a problem about HDF5. The following is the detailed related content: Attach your log file … WebNov 10, 2024 · GreenleafLab / ArchR Public. Notifications Fork 96; Star 284. Code; Issues 15; Pull requests 9; Discussions; Actions; Projects 0; Security; Insights New issue Have a question about this project? ... ArchR logging to : ArchRLogs/ArchR-addReproduciblePeakSet-a325acb7b94-Date-2024-11-10_Time-17-01-14.log If there is …
Web5 hours ago · GreenleafLab / ArchR Public. Notifications Fork 96; Star 284. Code; Issues 18; Pull requests 9; Discussions; Actions; Projects 0; Security; Insights ... , reducedDims = "IterativeLSI" ) ArchR logging to : ArchRLogs/ArchR-addPeak2GeneLinks-28e376a2da62-Date-2024-04-14_Time-16-57-19.log If there is an issue, please report to github with … WebJun 14, 2024 · GreenleafLab / ArchR Public Notifications Fork 95 Star 282 Code Issues 15 Pull requests 9 Discussions Actions Projects Security Insights Peak call summary #821 Unanswered NoemieL asked this question in Questions / Documentation edited by rcorces NoemieL on Jun 14, 2024 Hello,
WebMar 2, 2024 · Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community. WebArchR is a full-featured R package for processing and analyzing single-cell ATAC-seq data. ArchR provides the most extensive suite of scATAC-seq analysis tools of any software …
WebOct 17, 2024 · GreenleafLab / ArchR Public Notifications Fork 95 Star 282 Code Issues 16 Pull requests 9 Discussions Actions Projects Security Insights New issue ArchR object …
WebApr 30, 2024 · Previously, I have used ArchR successfully to analyze fragments.tsv.gz files from cellranger-atac outputs. However, I tried to filter out specific cell barcodes in the … clarkson motors queensburyWebArchR logging to : ArchRLogs/ArchR-addGeneIntegrationMatrix-11f6561f7d62-Date-2024-09-29_Time-12-16-33.log If there is an issue, please report to github with logFile! 2024-09-29 12:16:33 : Running Seurat's Integration Stuart* et al 2024, 0.002 mins elapsed. clarkson motors bradfordWebOct 11, 2024 · ArchR-createArrows-6dde1096a29b-Date-2024-10-11_Time-13-52-12.log Hello, I am trying to run through the tutorial data set and have run into an error where … clarkson mt view rapid citydownload d\u0026d musicWebJul 27, 2024 · Yes - ArchR works for ATAC and RNA data acquired from different cells (see the manual) as well as the newer multiome approaches. Our expectation is that you process your RNA-only data outside of ArchR (for ex. with Seurat) and then use that object as import to ArchR. 1 0 replies Sign up for free to join this conversation on GitHub . clarkson motors queensbury bradfordWebI'm continuously try to set-up and understand the data analysis workflow using ArchR. During following "full tutorial", I got question. After calculating gene scores, how can I identify the cell type in each cluster? (without scRNA-Seq data) Full tutorial looks not show the method how to. Just suggested to combine with scRNA-Seq data. clarkson movers and auctionsWebSep 28, 2024 · I am using my dataset for ArchR analyses. These are scATAC seq dataset. I am able to run through the initial steps of creation of arrow files but it seems to be stuck at "Creating ArrowFile From Temporary File 9.113 mins elapsed" for over two hours. clarkson motel